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杨剑老师介绍
杨 剑 博士
主要研究领域:生物信息学
主要研究工作:
1.重要病原体的比较基因组学研究；
2.重要病毒和细菌的的分子进化和流行病学特征的研究；
3.传染病流行规律的统计学模型的构建。
主要代表论文：
1. Yan Y, Yang J, Dou Y, Chen M, Ping S, Peng J, Lu W, Zhang W, Yao Z, Li H, Liu W, He S, Geng L, Zhang X, Yang F, Yu H, Zhan Y, Li D, Lin Z, Wang Y, Elmerich C, Lin M, Jin Q. Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501. Proc Natl Acad Sci U S A. 2008;105(21):7564-7569. (Co-first author)
2. Yang J, Chen L, Sun L, Yu J, Jin Q. VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics. Nucleic Acids Res. 2008 ;36(Database issue):D539-542. (First author)
3. Yang J, Chen L, Wang L, Zhang W, Liu T, Jin Q. TrED: the Trichophyton rubrum Expression Database.BMC Genomics. 2007;8:250. (First author)
4. Yang J, Nie H, Chen L, Zhang X, Yang F, Xu X, Zhu Y, Yu J, Jin Q. Revisiting the molecular evolutionary history of Shigella spp. J Mol Evol. 2007;64(1):71-79. (First author)
5. Yang J, Chen L, Yu J, Sun L, Jin Q. ShiBASE: an integrated database for comparative genomics of Shigella. Nucleic Acids Res. 2006;34(Database issue):D398-401. (First author)
6. Yang F, Yang J, Zhang X, Chen L, Jiang Y, Yan Y, Tang X, Wang J, Xiong Z, Dong J, Xue Y, Zhu Y, Xu X, Sun L, Chen S, Nie H, Peng J, Xu J, Wang Y, Yuan Z, Wen Y, Yao Z, Shen Y, Qiang B, Hou Y, Yu J, Jin Q. Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery. Nucleic Acids Res. 2005;33(19):6445-6458. (Co-first author)
7. Chen L, Yang J, Yu J, Yao Z, Sun L, Shen Y, Jin Q.VFDB: a reference database for bacterial virulence factors. Nucleic Acids Res. 2005;33(Database issue):D325-328. (Co-first author)
8. Yang J, Wang J, Chen L, Yu J, Dong J, Yao ZJ, Shen Y, Jin Q, Chen R. Identification and characterization of simple sequence repeats in the genomes of Shigella species. Gene. 2003;322:85-92. (First author)
9. Yang J, Wang J, Yao ZJ, Jin Q, Shen Y, Chen R. GenomeComp: a visualization tool for microbial genome comparison. J Microbiol Methods. 2003;54(3):423-426. (First author)
主要研究领域:生物信息学
主要研究工作:
1.重要病原体的比较基因组学研究；
2.重要病毒和细菌的的分子进化和流行病学特征的研究；
3.传染病流行规律的统计学模型的构建。
主要代表论文：
1. Yan Y, Yang J, Dou Y, Chen M, Ping S, Peng J, Lu W, Zhang W, Yao Z, Li H, Liu W, He S, Geng L, Zhang X, Yang F, Yu H, Zhan Y, Li D, Lin Z, Wang Y, Elmerich C, Lin M, Jin Q. Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501. Proc Natl Acad Sci U S A. 2008;105(21):7564-7569. (Co-first author)
2. Yang J, Chen L, Sun L, Yu J, Jin Q. VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics. Nucleic Acids Res. 2008 ;36(Database issue):D539-542. (First author)
3. Yang J, Chen L, Wang L, Zhang W, Liu T, Jin Q. TrED: the Trichophyton rubrum Expression Database.BMC Genomics. 2007;8:250. (First author)
4. Yang J, Nie H, Chen L, Zhang X, Yang F, Xu X, Zhu Y, Yu J, Jin Q. Revisiting the molecular evolutionary history of Shigella spp. J Mol Evol. 2007;64(1):71-79. (First author)
5. Yang J, Chen L, Yu J, Sun L, Jin Q. ShiBASE: an integrated database for comparative genomics of Shigella. Nucleic Acids Res. 2006;34(Database issue):D398-401. (First author)
6. Yang F, Yang J, Zhang X, Chen L, Jiang Y, Yan Y, Tang X, Wang J, Xiong Z, Dong J, Xue Y, Zhu Y, Xu X, Sun L, Chen S, Nie H, Peng J, Xu J, Wang Y, Yuan Z, Wen Y, Yao Z, Shen Y, Qiang B, Hou Y, Yu J, Jin Q. Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery. Nucleic Acids Res. 2005;33(19):6445-6458. (Co-first author)
7. Chen L, Yang J, Yu J, Yao Z, Sun L, Shen Y, Jin Q.VFDB: a reference database for bacterial virulence factors. Nucleic Acids Res. 2005;33(Database issue):D325-328. (Co-first author)
8. Yang J, Wang J, Chen L, Yu J, Dong J, Yao ZJ, Shen Y, Jin Q, Chen R. Identification and characterization of simple sequence repeats in the genomes of Shigella species. Gene. 2003;322:85-92. (First author)
9. Yang J, Wang J, Yao ZJ, Jin Q, Shen Y, Chen R. GenomeComp: a visualization tool for microbial genome comparison. J Microbiol Methods. 2003;54(3):423-426. (First author)
杨剑老师相关教学资源
- 北京协和医学院教学资源
- 杨剑老师课程教学资源
