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徐云老师介绍
徐云，男，1960年生，博士，中国科学技术大学计算机系副教授。2002年中国科学技术大学计算机系博士毕业，获计算机软件与理论专业博士学位,现在国家高性能计算中心（合肥）从事研究工作。近几年主要研究并行分布式算法、并行应用系统开发、生物文献挖掘、蛋白质功能位点预测、单体型问题等。2008年，“《并行计算》课程的创建及其辐射与示范作用”项目获安徽省教学成果特等奖，本人排名第2。至今已主持了国家重点自然科学基金子课题、973子课题、中科院软件所开放基金各1项，国家精品课程“并行计算”网络教学建设应用项目的主要参加人，并作为骨干参与了863、973、发改委等国家级课题及省部级科研项目10多项。在Bioinformatics、BMC Bioinformatics、计算机学报和软件学报等刊物和国际学术会议上发表学术论文30余篇。
主要研究方向：高性能计算理论与应用、计算生物学等。
主要论著：
[1]Yun Xu, ZhiHao Wang, YiMing Lei, YuZhong Zhao and Yu Xue. (2009) “MBA: A Literature Mining System for Extracting Biomedical Abbreviations.” BMC Bioinformatics. 10: 14.
[2]Yuzhong Zhao, Yun Xu, Zhihao Wang, Hong Zhang and Guoliang Chen. (2008) A Better Block Partition and Ligation Strategy for Individual Haplotyping. Bioinformatics. 24 (23): 2720-2725.
[3]Kunpeng Zhang, Yun Xu, Guoliang Chen. (2008) “PECB: Prediction of Enzyme Catalytic Residues Based on Na?ve Bayes Classification.” Int. J. of Bioinformatics Research and Application. 4 (3): 295-305.
[4]徐云, 鄢冰峰, 陈国良. (2008) “全部到全部组播的核管理机制及其算法研究.” 计算机研究与发展. 45 (6): 923-929.
[5]陈国良, 孙广中, 徐云, 吕敏. (2008) “并行算法研究方法学.” 计算机学报. 31 (9): 1493-1502.
[6]Yun Xu, Zhihao Wang, Yuzhong Zhao and Yu Xue. (2008) “A New Alignment Algorithm to Identify Definitions Corresponding to Abbreviations in Biomedical Text.” Workshop on Knowledge Discovery and Data mining, Adelaide, Australia, 23-24, January, 2008, pp118-124.
[7]He Huang, Yun Xu, Yu-e Sun, Liusheng Huang. (2008) “Cluster-Based Load Balancing Multi-path Routing Protocol in Wireless Sensor Networks.” Proceedings of the 7th World Congress on Intelligent CControl and Automation(WCICA'08), Chongqing, China, 2008, pp6692-6696.
[8]Yan Luo, Yun Xu, LiuSheng Huang, Hongli Xu. (2008) “A Tracking Range Based Ant-Colony Routing Protocol for Mobile Wireless Sensor Network.” 4th International Conference on Mobile Ad-hoc and Sensor Networks, 10-12 December, 2008, pp116-121.
[9]Qiangfeng Zhang, Yuzhong Zhao, Guoliang Chen, Yun Xu. (2006) “Estimate haplotype frequencies in pedigrees.” BMC Bioinformatics. 7 (Suppl 4): S5.
[10]Yuzhong Zhao, Yun Xu, Qiangfeng Zhang, Guoliang Chen. (2007) “An Overview of the Haplotype Problems and Algorithms.” Frontiers of Computer Science in China. 1 (3): 272-282.
[11]Zhang, Qiangfeng; Xu, Yun; Chen, Guoliang; Che, Haoyang. (2007) “Haplotyping and Haplotype Frequency Estimates on Trio Genotype Data. Chinese Journal of Software.18 (9): 2090-2099.
[12]Kunpeng Zhang, Yun Xu, Yifei Shen and Guoliang Chen. (2006) “Using a Neural Networking Method to Predict the Protein Phosphorylation Sites with Specific Kinase.” Proceeding of Third International Symposium on Neural Networks(ISNN 2006) Part III, page 682-689. Lecture Notes in Computer Science 3973 Springer 2006, ISBN 3-540-34482-9 Cheng Du, China, July. 2006
[13]徐云, 陈国良, 张强峰, 顾钧. (2003) “随机算法异步并行化的效率分析.” 软件学报. 14 (5): 871-876.
[14]陈国良, 谢幸, 徐云, 顾钧. (2002) “随机算法重启策略的构造及其在TSP中的应用.” 计算机学报. 25 (5): 514-519.
[15]徐云, 陈国良, 许胤龙, 顾钧. (2001) ”O(m2)时间求解SAT问题的随机算法.” 计算机学报. 24 (11): 1136-1141.
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联系电话:(0551)3602441 E-mail: xuyun@ustc.edu.cn
主要研究方向：高性能计算理论与应用、计算生物学等。
主要论著：
[1]Yun Xu, ZhiHao Wang, YiMing Lei, YuZhong Zhao and Yu Xue. (2009) “MBA: A Literature Mining System for Extracting Biomedical Abbreviations.” BMC Bioinformatics. 10: 14.
[2]Yuzhong Zhao, Yun Xu, Zhihao Wang, Hong Zhang and Guoliang Chen. (2008) A Better Block Partition and Ligation Strategy for Individual Haplotyping. Bioinformatics. 24 (23): 2720-2725.
[3]Kunpeng Zhang, Yun Xu, Guoliang Chen. (2008) “PECB: Prediction of Enzyme Catalytic Residues Based on Na?ve Bayes Classification.” Int. J. of Bioinformatics Research and Application. 4 (3): 295-305.
[4]徐云, 鄢冰峰, 陈国良. (2008) “全部到全部组播的核管理机制及其算法研究.” 计算机研究与发展. 45 (6): 923-929.
[5]陈国良, 孙广中, 徐云, 吕敏. (2008) “并行算法研究方法学.” 计算机学报. 31 (9): 1493-1502.
[6]Yun Xu, Zhihao Wang, Yuzhong Zhao and Yu Xue. (2008) “A New Alignment Algorithm to Identify Definitions Corresponding to Abbreviations in Biomedical Text.” Workshop on Knowledge Discovery and Data mining, Adelaide, Australia, 23-24, January, 2008, pp118-124.
[7]He Huang, Yun Xu, Yu-e Sun, Liusheng Huang. (2008) “Cluster-Based Load Balancing Multi-path Routing Protocol in Wireless Sensor Networks.” Proceedings of the 7th World Congress on Intelligent CControl and Automation(WCICA'08), Chongqing, China, 2008, pp6692-6696.
[8]Yan Luo, Yun Xu, LiuSheng Huang, Hongli Xu. (2008) “A Tracking Range Based Ant-Colony Routing Protocol for Mobile Wireless Sensor Network.” 4th International Conference on Mobile Ad-hoc and Sensor Networks, 10-12 December, 2008, pp116-121.
[9]Qiangfeng Zhang, Yuzhong Zhao, Guoliang Chen, Yun Xu. (2006) “Estimate haplotype frequencies in pedigrees.” BMC Bioinformatics. 7 (Suppl 4): S5.
[10]Yuzhong Zhao, Yun Xu, Qiangfeng Zhang, Guoliang Chen. (2007) “An Overview of the Haplotype Problems and Algorithms.” Frontiers of Computer Science in China. 1 (3): 272-282.
[11]Zhang, Qiangfeng; Xu, Yun; Chen, Guoliang; Che, Haoyang. (2007) “Haplotyping and Haplotype Frequency Estimates on Trio Genotype Data. Chinese Journal of Software.18 (9): 2090-2099.
[12]Kunpeng Zhang, Yun Xu, Yifei Shen and Guoliang Chen. (2006) “Using a Neural Networking Method to Predict the Protein Phosphorylation Sites with Specific Kinase.” Proceeding of Third International Symposium on Neural Networks(ISNN 2006) Part III, page 682-689. Lecture Notes in Computer Science 3973 Springer 2006, ISBN 3-540-34482-9 Cheng Du, China, July. 2006
[13]徐云, 陈国良, 张强峰, 顾钧. (2003) “随机算法异步并行化的效率分析.” 软件学报. 14 (5): 871-876.
[14]陈国良, 谢幸, 徐云, 顾钧. (2002) “随机算法重启策略的构造及其在TSP中的应用.” 计算机学报. 25 (5): 514-519.
[15]徐云, 陈国良, 许胤龙, 顾钧. (2001) ”O(m2)时间求解SAT问题的随机算法.” 计算机学报. 24 (11): 1136-1141.
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联系电话:(0551)3602441 E-mail: xuyun@ustc.edu.cn
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